The eGenomics System has been used in beta trials by New York Hospital Queens, a 450 bed teaching hospital in the Cornell University Hospital network. The system is also currently being used to track infectious agents collected from approximately 30 New Jersey hospitals. Scientists at the CDC, Rockefeller University, Duke University Medical Center, Purdue University, The Institute for Genomic Research (TIGR), and other research facilities located in Australia, Japan, Canada, India, Portugal, The Netherlands, Germany, Mexico, Egypt and Scotland currently use the eGenomics Internet database software.

The eGenomics System was successfully used in early alpha stage trials by New York Presbyterian Hospital and Mount Sinai Toronto Hospital.